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SRX24448725: GSM8250577: Time Point_0dpc_Group_PBS_Sample19; Sus scrofa domesticus; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 39M spots, 4G bases, 1.2Gb downloads

External Id: GSM8250577_r1
Submitted by: IRTA-CReSA
Study: Elucidating the Onset of Cross-protective Immunity after Intranasal Vaccination with the Attenuated African Swine Fever Vaccine Candidate BA71?CD2
show Abstracthide Abstract
African swine fever (ASF) is a deadly disease of swine currently causing a worldwide pandemic leading to severe economic consequences for the porcine industry. The control of disease spread is hampered by the limitation of available effective vaccines. Live attenuated vaccines (LAVs) are currently the most advanced vaccine prototypes, providing strong protection against ASF. However, the significant advances achieved using LAVs must be complemented with further studies to analyse vaccine-induced immunity. Here we characterized the onset of cross-protective immunity triggered by the LAV candidate BA71?CD2. Intranasally vaccinated pigs were challenged with the virulent Georgia 2007/1 strain at days 3, 7 and 12 postvaccination. Only the animals vaccinated 12 days before challenge effectively controlled infection progression, showing low virus loads, minor clinical signs and lack of the unbalanced inflammatory response characteristic of severe disease. Contrarily, animals vaccinated 3 or 7 days before challenge just showed a minor delay of disease progression. Virus-specific antibody responses and whole blood transcriptome signatures demonstrated that control of infection is associated with the presence of virus-specific antibodies and a cytotoxic response before challenge. These results contribute to our understanding of protective immunity induced by LAV-based vaccines, encouraging their use in emergency responses in ASF affected areas. Overall design: Twenty seven-week-old Landrace x Large white breed male pigs were divided into four groups of five pigs. Three groups were intranasally vaccinated with 10^6 pfu/animal of the attenuated strain BA71?CD2 at 3, 7 or 12-days pre-challenge. Each animal received 2 mL of the vaccine diluted in PBS via intranasal inoculation (1 mL/nostril). As a control group, the remaining 5 animals were inoculated with 2 mL of PBS. Each animal was intranasally inoculated with 2 mL containing 10^5 HAU50 of the highly virulent ASFV strain Georgia2007/1 (1 mL/nostril). Clinical signs were monitored daily throughout the length of the experiment. EDTA-blood, sera and nasal swabs were taken the days of vaccination and challenge, and at 3, 7 and 9 days post-challenge (dpc) to assess viral loads and host immune responses. Clinical signs were evaluated following standardized guidelines. Whole blood was collected and analysed at 0, 3 and 7 dpc by RNA-seq.
Sample: Time Point_0dpc_Group_PBS_Sample19
SAMN41192851 • SRS21202818 • All experiments • All runs
Library:
Name: GSM8250577
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Phenol-chloroform method, and further purified using RNeasy mini Kit, QIAGEN (RNAse-free water) following the manufacturer's protocol. DNase I (RNase-Free DNase Set, Qiagen) treatment for 15 min at room temperature was performed to ensure RNA quality. Total RNA from whole blood was submitted for sequencing to the Centre Nacional d'Anàlisi Genòmica (CNAG), Barcelona, Spain. Total RNA was quantified by Qubit RNA BR Assay kit (Thermo Fisher Scientific) and the RNA integrity was estimated by using RNA 6000 Nano Bioanalyzer 2100 Assay (Agilent). The RNASeq libraries were prepared with KAPA mRNA HyperPrep Kit (Roche) following the manufacturer´s recommendations starting with 500 ng of total RNA as the input material. The library was quality controlled on an Agilent 2100 Bioanalyzer with the DNA 7500 assay. The libraries were sequenced on NovaSeq 6000 (Illumina) with a read length of 2x51bp, following the manufacturer's protocol for dual indexing. Image analysis, base calling and quality scoring of the run were processed using the manufacturer's software Real Time Analysis (RTA 3.4.4).
Runs: 2 runs, 39M spots, 4G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR2889006119,530,5962G613.5Mb2024-05-08
SRR2889006219,436,5392G609.3Mb2024-05-08

ID:
32764765

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